PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.240650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 336aa    MW: 39051 Da    PI: 9.1593
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.240650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-5481361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eelv +yLk+k++++k++l +vi ++d+yk+ePwd+++  k+   e+kewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk+v
  Cucsa.240650.1   8 VPPGFRFHPTEEELVGYYLKRKINSQKIDL-DVIIDIDLYKMEPWDIQAncKFGYdEQKEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKAV 101
                     69****************************.99**************953433223677************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ls k++++g++ktLvfykgrap+g+ktdW+mheyrl
  Cucsa.240650.1 102 LS-KNRVIGMRKTLVFYKGRAPNGRKTDWIMHEYRL 136
                     **.8999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-586184IPR003441NAC domain
PROSITE profilePS5100556.6688184IPR003441NAC domain
PfamPF023656.5E-299136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEILESCVPP GFRFHPTEEE LVGYYLKRKI NSQKIDLDVI IDIDLYKMEP WDIQANCKFG  60
YDEQKEWYFF SHKDRKYPTG SRTNRATSAG FWKATGRDKA VLSKNRVIGM RKTLVFYKGR  120
APNGRKTDWI MHEYRLQTSE LAPIQAIWKM ETMIKKSKEK KHKNIKKLKK KIEEGWVVCR  180
AFKKPSPNQN QVIGPWNSYQ HQALYYDLKN NNNNNSQFAR SSPSFSDAMT PHTHMLNSSD  240
QHLSNFHQSY GSDLHHKQQN YQFVQLPNLE SPTLSTSFGT NETKINNNND NNPNGPCLEW  300
NVDLDDFLSS SQIVEMSPSS YPNLPQTFVD FCNDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-50513612140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6847090.0LN684709.1 Cucumis melo genomic scaffold, unassembled_sequence32202.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149423.10.0PREDICTED: NAC domain-containing protein 7
SwissprotQ9C8W91e-107NAC30_ARATH; NAC domain-containing protein 30
TrEMBLA0A0A0K4F00.0A0A0A0K4F0_CUCSA; Uncharacterized protein
STRINGPOPTR_0019s11330.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71383247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.18e-99vascular related NAC-domain protein 7